PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00006g00236.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 522aa    MW: 56801.7 Da    PI: 8.0667
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00006g00236.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.3e-12162186226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                               +++ C ++++t tCkyGd+CkF H+
  Peaxi162Scf00006g00236.1 162 GEKDCAHYMQTRTCKYGDSCKFDHP 186
                               7889********************8 PP

2zf-CCCH36.86.4e-12211237127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++ C+++++t  Ck+G+rCkF+H++
  Peaxi162Scf00006g00236.1 211 PGEPDCPYYMKTQKCKFGNRCKFNHPK 237
                               5789*********************96 PP

3zf-CCCH39.59.1e-13262286327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               ++ C f+++tGtCk+G++CkF+H++
  Peaxi162Scf00006g00236.1 262 EPTCTFYMKTGTCKFGATCKFHHPR 286
                               689********************96 PP

4zf-CCCH34.34e-11336362127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++ C+f+ +tG CkyG++C+++H++
  Peaxi162Scf00006g00236.1 336 PGEVDCPFYVKTGSCKYGGTCRYNHSE 362
                               57899********************95 PP

5zf-CCCH40.93.5e-13414437326
                               S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                               + +C+f+++tG+Ck+G+rC+F+H+
  Peaxi162Scf00006g00236.1 414 QIECDFYMKTGECKFGERCRFHHP 437
                               568********************9 PP

6zf-CCCH39.78.2e-13471492627
                               -SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                               C+++++tGtCkyG++CkF H+p
  Peaxi162Scf00006g00236.1 471 CPYYMKTGTCKYGATCKFDHPP 492
                               ********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.742160188IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-4160187IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-6161187IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9162186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-5166185IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821210238IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5210237IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-9212237IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6215239IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4216236IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.441259287IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-6259286IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-10262286IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6263287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-5265286IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.342335363IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6335362IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-9337362IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5339364IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4341362IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601411439IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-7411438IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6414440IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-10415437IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-5417437IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666465493IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6465492IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6469492IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-10471492IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5471490IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MANQLYGYNP SSSSTGLTAG GGRTTTRSTD DYLSKDKSLL LGGSTSYFTS SSYSPTTMLY  60
NSNVQSDSYI PTTATRVPGL GAYSQSSLTG PPGVDSYTPA AAADSAFAGF KRSSADSLYH  120
RTLLAARNTI GQTEAWFSAN PLAKRPRFES ASNLSIYPQR PGEKDCAHYM QTRTCKYGDS  180
CKFDHPIWVP EGGIPDWKEV PVVTESLPER PGEPDCPYYM KTQKCKFGNR CKFNHPKDST  240
ARLSQGSVQN SDASVLPDRP SEPTCTFYMK TGTCKFGATC KFHHPRDIQL PSPKQENGSA  300
GNPGSANSEM TEDTTLIKPL SVPALLHNSK GLPIRPGEVD CPFYVKTGSC KYGGTCRYNH  360
SERTISPVFG APPTAHLNIG MVNPAASFLQ NFDPRLTQTM LGLLPPVYPQ RPGQIECDFY  420
MKTGECKFGE RCRFHHPLDR STPVVSANDA QQPNVKLTLA GLPRREGAVH CPYYMKTGTC  480
KYGATCKFDH PPPGEVMAMA TSQGASLPVE GEDNADVNEQ QQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754514e-96HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782011.10.0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLK4DD740.0K4DD74_SOLLC; Uncharacterized protein
STRINGSolyc12g017410.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106402125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)